[HELP] Hybrid introducing audio delay that is not present in source material

[4i4oVi40]

I've been doing other files like MPEG2 DVD to AVC and they're fine, although those also insert a -43ms delay.

Well, doesn't it seem suspicious to you that totally unrelated video sources produce exactly the same delay of -43ms?
This does seem like a bug to me. And I'd like to have solution or at least workaround. Preferably, inside Hybrid.