[HELP] Rename tracks help please and help with chapters

[Selur]

Looking at what happens:

1. first audio stream get's extracted (17_54_42_1410_01_audio)
   "D:\Programs\Hybrid\64bit\ffmpeg.exe" -y -threads 8 -i "G:\PLEX Media\New Things To Sort\Eragon (2006)\Eragon (2006).mp4" -map 0:1 -vn -sn -acodec copy  -map_metadata -1 -metadata handler_name="Hybrid 2018.07.27.1" "C:\Users\mapsk\AppData\Local\Temp\iId_1_aid_0_lang_en_17_54_42_1410_01.aac"
   
2. second audio stream get's extracted (17_54_42_1410_02_audio)
   
   MP4Box -raw 2 "G:\PLEXME~1\NEWTHI~1\ERAGON~1\ERAGON~1.MP4" -out "C:\Users\mapsk\AppData\Local\Temp\iId_2_aid_1_lang_en_17_54_42_1410_02.ac3"
3. second audio stream is converted to 128kBit/s ac3 (17_54_42_1410_03_audio)
   
   ffmpeg -y -threads 8 -i "C:\Users\mapsk\AppData\Local\Temp\iId_2_aid_1_lang_en_17_54_42_1410_02.ac3" -b:a 128k -ac 2 -ar 48000 -channel_layout stereo "C:\Users\mapsk\AppData\Local\Temp\iId_2_aid_1_lang_en_17_54_42_1410_03.ac3"
4. old temporary second audio stream get's deleted (17_54_42_1410_03_audio)
   
5. subtitles get converted form .srt to ttxt (17_54_42_1410_05_subs)
   
6. time codes get saved into a file (17_54_42_1410_06_create)
   
7. video get's extracted (17_54_42_1410_07_video)
   
8. Video get's remuxed into an mp4 container (17_54_42_1410_08_muxing)
   
   MP4Box -par 1=1:1 -add "C:\Users\mapsk\AppData\Local\Temp\Eragon (2006)_new_17_54_42_1410_07.264" -brand avc1 -tmp "C:\Users\mapsk\AppData\Local\Temp" -new "G:\PLEX Media\New Things To Sort\Eragon (2006)\17_54_42_1410__08_mp4Temp.mp4"
9. Old extracted video stream gets deleted (17_54_42_1410_09_cleanUp)
   
10. Time codes get added to the temporary mp4 file (17_54_42_1410_10_muxing)
    
    mp4fpsmod -t "C:\Users\mapsk\AppData\Local\Temp\timecodeV2_17_54_42_1410.tc" -x "G:\PLEX Media\New Things To Sort\Eragon (2006)\17_54_42_1410__08_mp4Temp.mp4" -o "G:\PLEX Media\New Things To Sort\Eragon (2006)\17_54_42_1410__10_withTimeCodes_0.mp4"
11. Old temporary mp4 files gets deleted (17_54_42_1410_11_cleanUp)
    
12. Time code file gets deleted (17_54_42_1410_12_cleanUp)
    
13. Current mp4 file gets renamed (17_54_42_1410_13_rename)
    
14. Chaper information get saved into a chapter file (17_54_42_1410_14_create)
    
15. Audio, subtitles and tags get added to the mp4 file (17_54_42_1410_15_muxing)
    
16. Old mp4 file gets deleted (17_54_42_1410_16_cleanUp)
    
17. Old audio file (1st) get's deleted (17_54_42_1410_17)
    
18. Old audio file (2nd) get's deleted (17_54_42_1410_18)
    
19. Old chapter file get's deleted (17_54_42_1410_19)
    
20. Mp4 file gets renamed (17_54_42_1410_20_rename)
    
21. Old subtitle file get's deleted (17_54_42_1410_21)
    

Only thing that seems uncommon is that Hybrid first uses ffmpeg and then MP4Box for the audio extraction.
-> Try whether it helps to enable: "Config->Intput->Extraction->Stream extraction with ffmpeg"

Cu Selur

Ps.: A small sample of the input file would be nice to reproduce this here.