[HELP] Loading a new file does not scan audio on the new file?

[Mapsking]

Looking through the debug output I see three subtitle files for "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011).mp4":

• G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011).en.srt
  
• "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 1.en.srt"
  
• "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 2.en.srt"
  

which get added to the output mkv, but there are no 'cleanUp'-jobs and I see no info inside the debug output that they got deleted by Hybrid.
So unless mkvmerge deletes them when calling (which it should not):

"D:\Programs\Hybrid\64bit\mkvmerge.exe" --ui-language en -o "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011).mkv" --global-tags "C:\Users\mapsk\AppData\Local\Temp\The Smurfs (2011)_19_43_00_5810__06.xml" --default-track 0:yes --track-name 0:"The Smurfs (2011)" --language 0:en --default-duration 0:24000/1001fps --aspect-ratio-factor 0:1 --chapter-charset UTF-8 --chapters "C:\Users\mapsk\AppData\Local\Temp\19_43_00_5810__07.chp" --compression -1:none --forced-track 0:yes --no-audio --no-subtitles --timecodes 0:"C:\Users\mapsk\AppData\Local\Temp\timecodeV2_19_43_00_5810.tc" "C:\Users\mapsk\AppData\Local\Temp\The Smurfs (2011)_19_43_00_5810_05.mp4" --track-name 0:"5.1 Channels" --language 0:en --default-track 0:yes --forced-track 0:no -a 0 --compression -1:none --no-video --no-subtitles --no-chapters "C:\Users\mapsk\AppData\Local\Temp\iId_1_aid_0_lang_en_19_43_00_5810_01.aac" --track-name 0:"Commentary 1" --language 0:en --default-track 0:no --forced-track 0:no -a 0 --compression -1:none --no-video --no-subtitles --no-chapters "C:\Users\mapsk\AppData\Local\Temp\iId_2_aid_1_lang_en_19_43_00_5810_02.ac3" --track-name 0:"Commentary 2" --language 0:en --default-track 0:no --forced-track 0:no -a 0 --compression -1:none --no-video --no-subtitles --no-chapters "C:\Users\mapsk\AppData\Local\Temp\iId_3_aid_2_lang_en_19_43_00_5810_03.ac3" --forced-track 0:no --default-track 0:yes --compression -1:none --no-video --no-audio --no-chapters --track-name 0:"Movie Subtitles" --language 0:en "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011).en.srt" --forced-track 0:no --default-track 0:yes --compression -1:none --no-video --no-audio --no-chapters --track-name 0:"Commentary 1 Subtitles" --language 0:en "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 1.en.srt" --forced-track 0:no --default-track 0:yes --compression -1:none --no-video --no-audio --no-chapters --track-name 0:"Commentary 2 Subtitles" --language 0:en "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 2.en.srt"

it atm. doesn't look like Hybrid is deleting them.
-> No clue where your files are. According to the debug output they should still be at:

• G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011).en.srt
  
• "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 1.en.srt"
  
• "G:\PLEX Media\New Things To Sort\The Smurfs (2011)\The Smurfs (2011) Commentary 2.en.srt"
  

As a side note: since they were .srt file neither Hybrid nor mkvmerge should have modified them, so you could extract them from the mkv (and rename them) if you need them.

Cu Selur

Weird, they definitely were not in the folder I had saved them in, as obviously I loaded all three from the same location.  It is weird that the movie subtitle one was still there, but the two commentary ones were gone.  Thanks for the reminder about the option to extract them from the .mkv, I had spaced that out.  With that option, all I need to do is rename them.  An extra step, but not a big deal, compared to recreating them.  ;-)  I only recall this happening recently, and had never seen it until my recent post.  Would a higher level log help, even though it seems it might not be from Hybrid?  Is it possible it is from one of the development versions you sent me, that I'm currently using?  Any other ideas why the two might get deleted, but not the other?  Maybe something weird like spaces in the title?  I don't know, just a thought.