Encode says 130% complete for some reason and hasn't finished

[lostsnowboardvideos]

I am encoding an mkv input from a blu-ray disc and my input says it's 29.97fps/vfr, AVC with PCM audio. Total frame count is 67425 but debug output has it up to nearly 90000 even though output says 67425. Debug output attached and input clip sample linked.

Input